qc.from.segstats.tables: Perform data quality check based on a segstats table.

In neuroconductor-devel/fsbrain: Managing and Visualizing Brain Surface Data

Description

Determine subjects that potentially failed segmentation, based on segstats table data. The input table file must be a segmentation or parcellation table, generated by running the FreeSurfer tools 'aparcstats2table' or 'asegstats2table' for your subjects.

Usage

qc.from.segstats.tables(filepath_lh, filepath_rh, ...)

Arguments

filepath_lh	path to left hemisphere input file, a tab-separated file generated by running the FreeSurfer tools 'aparcstats2table' or 'asegstats2table'. The command line in the system shell would be something like 'aparcstats2table_bin –subjectsfile $subjects_file –meas $measure –hemi $hemi -t $aparc_output_table'.
filepath_rh	path to equivalent right hemisphere input file.
...	parameters passed to qc.from.regionwise.df.

Value

qc result as a hemilist, each entry contains a named list as returned by qc.from.regionwise.df.

neuroconductor-devel/fsbrain documentation built on Oct. 4, 2020, 2:22 a.m.