Description Usage Arguments Value See Also
Applies an affine transformation with FLIRT then the warp image with FNIRT
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infile |
(character) input filename |
reffile |
(character) reference image to be registered to |
flirt.omat |
(character) Filename of output affine matrix |
flirt.outfile |
(character) Filename of output affine-registered image |
fnirt.warpfile |
(character) Filename of warp image from
|
outfile |
(character) output filename |
retimg |
(logical) return image of class nifti |
reorient |
(logical) If retimg, should file be reoriented when read in?
Passed to |
intern |
(logical) pass to |
flirt.opts |
(character) additional options to FLIRT |
opts |
(character) additional options to FNIRT |
verbose |
(logical) print out command before running |
... |
additional arguments passed to |
character or logical depending on intern
fnirt_with_affine
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