itksnap: Run ITK-SNAP

In neuroconductor-devel/itksnapr: Package of ITK-SNAP

Description

Executes ITK-SNAP

Usage

itksnap(grayscale, overlay = NULL, segmentation = NULL, labels = NULL,
  zoom = NULL, verbose = TRUE, ...)

Arguments

grayscale	filenames or nifti objects to be displayed.
overlay	filenames or nifti objects to be set as overlays
segmentation	segmentation image using -s option
labels	label descriptions using -s option
zoom	initial zoom in screen pixels/mm
verbose	Print out the command executed
...	arguments to pass to itksnap_cmd

Value

Return of system command

Examples

dims = rep(10, 3)
arr = array(rnorm(prod(dims)), dim = dims)
nim = oro.nifti::nifti(arr)
## Not run: 
itksnap(nim)

## End(Not run)

neuroconductor-devel/itksnapr documentation built on May 6, 2021, 1:48 p.m.