Man pages for neuroconductor-devel/oro.nifti
Rigorous - NIfTI + ANALYZE + AFNI : Input / Output

afni-classClass "afni"
anlzConstructor for Analyze
anlz-classClass "anlz"
anlz-nifti-opsOperations for Objects in the ANALYZE and NIfTI classes
as.anlzas.anlz
as.niftias.nifti
audit_trailFacilitate the Creation and Modification of Audit Trails
audit_trail-methodsExtract or Replace NIfTI Audit Trail
aux_file-methodsExtract Image Attribute 'aux_file'
bitpix-methodsExtract Image Attribute 'bitpix'
bitwiseBitwise Conversion Subroutines
blend-methodsMerge Two NIfTI or ANALYZE Volumes
cal_imgSet Minimum/Maximum Values for NIfTI data
cal_max-methodsExtract Image Attribute 'cal_max'
cal_min-methodsExtract Image Attribute 'cal_min'
cal_units-methodsExtract Image Attribute 'cal_units'
coerce-methodsForce an Object to Belong to the ANALYZE or NIfTI Class
compressed-methodsExtract Image Attribute 'compressed'
convert_afniConvert AFNI data codes
convert_anlzConvert ANALYZE Codes
convert_niftiConvert NIfTI Codes
data_type-methodsExtract Image Attribute 'data_type'
datatype-methodsExtract Image Attribute 'datatype'
db_name-methodsExtract Image Attribute 'db_name'
descrip-methodsExtract Image Attribute 'descrip'
dim_info-methodsExtract Image Attribute 'dim_info'
dim_-methodsExtract Image Attribute 'dim_'
dim_un0-methodsExtract Image Attribute 'dim_un0'
drop_img_dimDrop Image Dimension
exp_date-methodsExtract Image Attribute 'exp_date'
exp_time-methodsExtract Image Attribute 'exp_time'
extender-methodsExtract Image Attribute 'extender'
extents-methodsExtract Image Attribute 'extents'
field_skip-methodsExtract Image Attribute 'field_skip'
funused1-methodsExtract Image Attribute 'funused1'
funused2-methodsExtract Image Attribute 'funused2'
funused3-methodsExtract Image Attribute 'funused3'
generated-methodsExtract Image Attribute 'generated'
glmax-methodsExtract Image Attribute 'glmax'
glmin-methodsExtract Image Attribute 'glmin'
hist_un0-methodsExtract Image Attribute 'hist_un0'
hkey_un0-methodsExtract Image Attribute 'hkey_un0'
hotmetalHot Metal Color Table
image-methodsMethods for Function 'image'
img_data-methodsExtract Image Attribute '.Data'
integerTranslationintegerTranslation
intent_code-methodsExtract Image Attribute 'intent_code'
intent_name-methodsExtract Image Attribute 'intent_name'
intent_p1-methodsExtract Image Attribute 'intent_p1'
intent_p2-methodsExtract Image Attribute 'intent_p2'
intent_p3-methodsExtract Image Attribute 'intent_p3'
is_afnicheck object
is_anlzcheck object
is_nifticheck object
magic-methodsExtract Image Attribute 'magic'
miscellaneousDimension Accessor Functions
niftiConstructor for NIfTI
nifti_assign-methodsMethods for Function [<- in Package 'base'
niftiAuditTrail-classClass "niftiAuditTrail"
nifti-classClass "nifti"
niftiExtension-classClass "niftiExtension"
niftiExtensionSection-classClass "niftiExtensionSection"
niftiopsOperations for NIfTI Objects
nii2oroConvert RNifti niftiImage to oro.nifti nifti object
omax-methodsExtract Image Attribute 'omax'
omin-methodsExtract Image Attribute 'omin'
onefileCreates the 'onefile' Specification for NIfTI
orientation-methodsExtract NIfTI 3D Image Orientation
orient-methodsExtract Image Attribute 'orient'
origin-methodsExtract Image Attribute 'origin'
oro2niiConvert oro.nifti nifti to RNifti niftiImage object
orthographic-methodsMethods for Function 'orthographic' in Package 'dcemriS4'
overlay-methodsMethods for Function overlay
patient_id-methodsExtract Image Attribute 'patient_id'
performPermutationTransform array with orthogonal permutation matrix
pixdim-methodsExtract Image Attribute 'pixdim'
qform_code-methodsExtract Image Attribute 'qform_code'
qoffset_x-methodsExtract Image Attribute 'qoffset_x'
qoffset_y-methodsExtract Image Attribute 'qoffset_y'
qoffset_z-methodsExtract Image Attribute 'qoffset_z'
quatern_b-methodsExtract Image Attribute 'quatern_b'
quatern_c-methodsExtract Image Attribute 'quatern_c'
quatern_d-methodsExtract Image Attribute 'quatern_d'
quaternion2rotationConvert Quaternion into a Rotation Matrix
read_afnireadAFNI
read_anlzreadANALYZE
read_niftireadNIfTI
regular-methodsExtract Image Attribute 'regular'
removeRemove File Extensions Around the NIfTI/ANALYZE Formats
reorientReorient Image using NIfTI header
scannum-methodsExtract Image Attribute 'scannum'
scl_inter-methodsExtract Image Attribute 'scl_inter'
scl_slope-methodsExtract Image Attribute 'scl_slope'
session_error-methodsExtract Image Attribute 'session_error'
sform_code-methodsExtract Image Attribute 'sform_code'
sizeof_hdr-methodsExtract Image Attribute 'sizeof_hdr'
slice_code-methodsExtract Image Attribute 'slice_code'
slice_duration-methodsExtract Image Attribute 'slice_duration'
slice_end-methodsExtract Image Attribute 'slice_end'
slice-methodsMethods for Function 'slice'
slice_overlay-methodsMethods for Function slice_overlay
slice_start-methodsExtract Image Attribute 'slice_start'
smax-methodsExtract Image Attribute 'smax'
smin-methodsExtract Image Attribute 'smin'
srow_x-methodsExtract Image Attribute 'srow_x'
srow_y-methodsExtract Image Attribute 'srow_y'
srow_z-methodsExtract Image Attribute 'srow_z'
start_field-methodsExtract Image Attribute 'start_field'
tim_colorsTim's Useful Color Table
toffset-methodsExtract Image Attribute 'toffset'
transformCoordinateTranslate Voxel Coordinates
unused1-methodsExtract Image Attribute 'unused1'
verified-methodsExtract Image Attribute 'verified'
views-methodsExtract Image Attribute 'views'
vols_added-methodsExtract Image Attribute 'vols_added'
voxdimGets Voxel Dimensions
vox_offset-methodsExtract Image Attribute 'vox_offset'
voxresGets Voxel Resolution
vox_units-methodsExtract Image Attribute 'vox_units'
write_afni-methodswriteAFNI
write_anlzwriteANALYZE
write_niftiwriteNIfTI
xyzt_units-methodsExtract Image Attribute 'xyzt_units'
zero_transChange Intercept to 0 and Slope to 1 in NIfTI Object
neuroconductor-devel/oro.nifti documentation built on Nov. 1, 2017, 12:16 p.m.