n4_skull_strip: Skull Strip image

In neuroconductor-releases/LINDA: Lesion Identification with Neighborhood Data Analysis

Description

Skull Strip image

Usage

n4_skull_strip(file, template = system.file("extdata", "pennTemplate",
  "template.nii.gz", package = "LINDA"),
  template_brain = system.file("extdata", "pennTemplate",
  "templateBrain.nii.gz", package = "LINDA"),
  template_mask = system.file("extdata", "pennTemplate",
  "templateBrainMask.nii.gz", package = "LINDA"), verbose = TRUE,
  n_iter = 2)

Arguments

file	Filename of T1 image
template	Template full image
template_brain	Template brain image
template_mask	Template brain mask
verbose	print diagnostic messages
n_iter	Number of iterations undergone with abpN4 and abpBrainExtraction

Value

A list of output images, brain and corrected

neuroconductor-releases/LINDA documentation built on Nov. 13, 2020, 11:29 p.m.