fnirt: Register using FNIRT

In neuroconductor-releases/fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Description

This function calls fnirt to register infile to reffile and either saves the image or returns an object of class nifti

Usage

fnirt(
  infile,
  reffile,
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Arguments

infile	(character) input filename
reffile	(character) reference image to be registered to
outfile	(character) output filename
retimg	(logical) return image of class nifti
reorient	(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern	(logical) pass to system
opts	(character) additional options to FLIRT
verbose	(logical) print out command before running
...	additional arguments passed to readnii.

Value

character or logical depending on intern

neuroconductor-releases/fslr documentation built on Nov. 14, 2020, 11:55 p.m.