save.lesymap: Save the output of lesymap.

In neuroconductor/LESYMAP: Lesion to Symptom Mapping in R

Description

Function to save the output of lesymap.

Usage

save.lesymap(lsm, saveDir, infoFile = "Info.txt", template = NA,
  saveTemplate = F, savePatchImages = T, plot.alpha = 0.8,
  plot.axis = 3, plot.quality = 8, outputLogFile = "outputLog.txt",
  ...)

Arguments

lsm	object obtained with lesymap()
saveDir	folder to save to, will be created if it doesn't exist.
infoFile	(default='Info.txt') what should be the filename of the file with information.
template	(default=NA) an antsImage to overlay the results to. If the template is provided, results will be plotted and saved as image.
saveTemplate	(default=FALSE) should the template image also be saved? Useful when passing the results to a colleague.
savePatchImages	(default=TRUE) should the patch images be saved
plot.alpha	see plot.antsImage
plot.axis	see plot.antsImage
plot.quality	see plot.antsImage
outputLogFile	(default='outputLog.txt') the filename to save the console output
...	other arguments to use for plot().

Value

Nothing is returned. Files saved include resulting maps and a descriptive file with a lot of information about the lesymap run.

Author(s)

Dorian Pustina

neuroconductor/LESYMAP documentation built on May 28, 2020, 7:27 p.m.