ciftiTools: ciftiTools: Tools for Reading and Visualizing CIFTI Brain...

In neuroconductor/ciftiTools: Tools for Reading, Writing, Viewing and Manipulating CIFTI Files

Description

Here are groups of commonly-used functions in ciftiTools:

Details

Functions for reading in CIFTI or GIFTI data:

• read_xifti: Read in a CIFTI file as a "xifti"

• read_xifti2: Read in GIFTI files as a "xifti"

• as.xifti: Combine numeric data to form a "xifti"

• read_surf: Read in a surface GIFTI file as a "surf"

• info_cifti: Read the metadata in a CIFTI file

• load_surf: Read in a surface included in ciftiTools

• load_parc: Read in a parcellation included in ciftiTools

Functions for writing CIFTI or GIFTI data:

• write_cifti: Write a "xifti" to a CIFTI file

• write_metric_gifti: Write a numeric data matrix to a metric GIFTI file

• write_surf_gifti: Write a "surf" to a surface GIFTI file

• write_subcort_nifti: Write subcortical data to NIFTI files

• separate_cifti: Separate a CIFTI file into GIFTI and NIFTI files

Functions for manipulating "xifti"s:

• apply_xifti: Apply a function along the rows or columns of the "xifti" data matrix

• combine_xifti: Combine multiple "xifti"s with non-overlapping brain structures

• convert_xifti: Convert the intent of a "xifti"

• merge_xifti: Concatenate data matrices from multiple "xifti"s

• newdata_xifti: Replace the data matrix in a "xifti"

• remove_xifti: Remove a brain structure or surface from a "xifti"

• select_xifti: Select data matrix columns of a "xifti"

• transform_xifti: Apply a univariate transformation to a "xifti" or pair of "xifti"s

• add_surf: Add surfaces to a "xifti"

S3 methods for "xifti"s:

• summary and print: Summarize the contents.

• as.matrix: Convert data to a locations by measurements numeric matrix.

• dim: Obtain number of locations and number of measurements.

• plot: Visualize the cortical surface and/or subcortical data.

• +, -, *, /, ^, %%, %/%: Operation between a "xifti" and a scalar, or between two "xifti"s.

• abs, ceiling, exp, floor, log, round, sign, and sqrt: Univariate transformation of "xifti" data.

Functions for working with surfaces:

• read_surf: Read in a surface GIFTI file as a "surf"

• is.surf: Verify a "surf"

• write_surf_gifti: Write a "surf" to a surface GIFTI file

• view_surf: Visualize a "surf"

• resample_surf: Resample a "surf"

• rotate_surf: Rotate the geometry of a "surf"

neuroconductor/ciftiTools documentation built on Dec. 22, 2021, 1:09 a.m.