mri_normalize: Use Freesurfers MRI Normalize Algorithm

In neuroconductor/freesurfer: Wrapper Functions for 'Freesurfer'

Description

This function calls mri_normalize to normalize the values of the image, with white matter voxels around 110.

Usage

mri_normalize(file, outfile = NULL, retimg = TRUE, opts = "", ...)

Arguments

file	(character) input filename
outfile	(character) output filename
retimg	(logical) return image of class nifti
opts	(character) additional options to mri_normalize
...	additional arguments passed to fs_cmd.

Value

Character or nifti depending on retimg

Examples

## Not run: 
if (have_fs()){
    mri_normalize("/path/to/T1.nii.gz")
} 

## End(Not run)

neuroconductor/freesurfer documentation built on May 19, 2021, 5:19 a.m.