Files in neuroconductor/fsbrain

Managing and Visualizing Brain Surface Data

CONTRIBUTING.md R/atlas.R R/brainview_magick.R R/cbar.R R/cbar_magick.R R/coloredmesh.R R/curvature.R R/export.R R/fsdir_abstraction_group.R R/fsdir_abstraction_subject.R R/helpers.R R/hemilist.R R/metadata_io.R R/morph_agg.R R/morph_atlas_agg.R R/morph_concat.R R/optdata.R R/rglactions.R R/seg_stats.R R/spherical.R R/vis.R R/vis_group.R R/vis_meshes.R R/vis_multiview.R R/vis_surface_background.R R/vis_volume.R R/vis_volume_3d.R R/volume.R README.md man/alphablend.Rd man/annot.outline.Rd man/apply.label.to.morphdata.Rd man/apply.labeldata.to.morphdata.Rd man/apply.transform.Rd man/arrange.brainview.images.Rd man/arrange.brainview.images.grid.Rd man/boxcoords.from.bbox.Rd man/brainview.sd.Rd man/brainview.si.Rd man/brainview.sr.Rd man/brainview.t4.Rd man/brainview.t9.Rd man/brainviews.Rd man/can.plot.colorbar.Rd man/can.plot.colorbar.from.coloredmeshes.Rd man/check.subjectslist.Rd man/clip.data.Rd man/cm.cbry.Rd man/cm.div.Rd man/cm.heat.Rd man/cm.qual.Rd man/cm.seq.Rd man/collayer.bg.Rd man/collayer.bg.atlas.Rd man/collayer.bg.meancurv.Rd man/collayer.bg.sulc.Rd man/collayer.from.annot.Rd man/collayer.from.annotdata.Rd man/collayer.from.mask.data.Rd man/collayer.from.morphlike.data.Rd man/collayers.merge.Rd man/coloredmesh.from.annot.Rd man/coloredmesh.from.color.Rd man/coloredmesh.from.label.Rd man/coloredmesh.from.mask.Rd man/coloredmesh.from.morph.native.Rd man/coloredmesh.from.morph.standard.Rd man/coloredmesh.from.morphdata.Rd man/coloredmesh.from.preloaded.data.Rd man/coloredmesh.plot.colorbar.separate.Rd man/coloredmeshes.combined.data.range.Rd man/coloredmeshes.from.color.Rd man/coloredmeshes.get.md.Rd man/colorlist.brain.clusters.Rd man/combine.colorbar.with.brainview.animation.Rd man/combine.colorbar.with.brainview.image.Rd man/combine.colorbar.with.brainview.image.vertical.Rd man/common.makecmap.range.Rd man/cube3D.tris.Rd man/cubes3D.tris.Rd man/delete_all_optional_data.Rd man/demographics.to.fsgd.file.Rd man/desaturate.Rd man/download_fsaverage.Rd man/download_fsaverage3.Rd man/download_optional_data.Rd man/download_optional_paper_data.Rd man/draw.colorbar.Rd man/eeg_coords.Rd man/export.coloredmesh.ply.Rd man/face.edges.Rd man/find.freesurferhome.Rd man/find.subjectsdir.of.Rd man/force.to.range.Rd man/fs.coloredmesh.Rd man/fs.home.Rd man/fs.value.list.from.agg.res.Rd man/fsaverage.path.Rd man/fsbrain.renderable.Rd man/fsbrain.set.default.figsize.Rd man/fup.Rd man/gen.test.volume.Rd man/get.atlas.region.names.Rd man/get.rglstyle.Rd man/get.rglstyle.default.Rd man/get.rglstyle.edges.Rd man/get.rglstyle.parameters.Rd man/get.rglstyle.semitransparent.Rd man/get.rglstyle.shiny.Rd man/get.slice.indices.Rd man/get.subject.class.Rd man/get.view.angle.names.Rd man/getIn.Rd man/get_optional_data_filepath.Rd man/group.agg.atlas.native.Rd man/group.agg.atlas.standard.Rd man/group.annot.Rd man/group.concat.measures.native.Rd man/group.concat.measures.standard.Rd man/group.data.to.array.Rd man/group.label.Rd man/group.label.from.annot.Rd man/group.morph.agg.native.Rd man/group.morph.agg.standard.Rd man/group.morph.agg.standard.vertex.Rd man/group.morph.native.Rd man/group.morph.standard.Rd man/group.morph.standard.sf.Rd man/group.multimorph.agg.native.Rd man/group.multimorph.agg.standard.Rd man/group.surface.Rd man/hasIn.Rd man/hemi.lobe.labels.Rd man/hemilist.derive.hemi.Rd man/hemilist.get.combined.data.Rd man/hemilist.unwrap.Rd man/hemilist.wrap.Rd man/hull.retain.along.axis.Rd man/images.annotate.Rd man/images.rescale.to.max.canvas.Rd man/is.Triangles3D.Rd man/is.fs.coloredmesh.Rd man/is.fs.coloredvoxels.Rd man/is.hemilist.Rd man/label.border.Rd man/label.colFn.Rd man/label.colFn.inv.Rd man/label.from.annotdata.Rd man/label.to.annot.Rd man/labeldata.from.mask.Rd man/limit_fun.Rd man/limit_fun_na.Rd man/list_optional_data.Rd man/magick.grid.Rd man/makecmakeopts.merge.Rd man/mask.from.labeldata.for.hemi.Rd man/merge.hemi.annots.Rd man/mesh.vertex.included.faces.Rd man/mesh.vertex.neighbors.Rd man/mkco.cluster.Rd man/mkco.div.Rd man/mkco.heat.Rd man/mkco.seq.Rd man/normalize.Rd man/perform.na.mapping.Rd man/perform.rglactions.Rd man/plot.fsbrain.colorbar.Rd man/pp.named.list.Rd man/principal.curvatures.Rd man/print.fs.coloredmesh.Rd man/print.fs.coloredvoxels.Rd man/qc.for.group.Rd man/qc.from.regionwise.df.Rd man/qc.from.segstats.table.Rd man/qc.from.segstats.tables.Rd man/qc.vis.failcount.by.region.Rd man/ras2vox_tkr.Rd man/read.colorcsv.Rd man/read.md.demographics.Rd man/read.md.subjects.Rd man/read.md.subjects.from.fsgd.Rd man/recycle.Rd man/regions.to.ignore.Rd man/report.on.demographics.Rd man/rgl.coord.lines.Rd man/rglactions.Rd man/rglactions.has.key.Rd man/rglactions.transform.Rd man/rglo.Rd man/rglot.Rd man/rglvoxels.Rd man/shape.descriptor.names.Rd man/shape.descriptors.Rd man/shift.hemis.apart.Rd man/shift.hemis.rglactions.Rd man/sort.coloredmeshes.by.hemi.Rd man/sph2fs.Rd man/spread.values.over.annot.Rd man/spread.values.over.hemi.Rd man/spread.values.over.subject.Rd man/subject.annot.Rd man/subject.atlas.agg.Rd man/subject.filepath.any.Rd man/subject.filepath.morph.native.Rd man/subject.filepath.morph.standard.Rd man/subject.label.Rd man/subject.label.from.annot.Rd man/subject.lobes.Rd man/subject.mask.Rd man/subject.morph.native.Rd man/subject.morph.standard.Rd man/subject.num.verts.Rd man/subject.surface.Rd man/subject.volume.Rd man/surf.center.fsaverage.Rd man/surf.radius.fsaverage.Rd man/surfs.props.Rd man/symmrange.Rd man/test.numerical.meandiff.Rd man/test.numerical.meandiff.paired.Rd man/test.numerical.meandiff.unpaired.Rd man/vdata.split.by.hemi.Rd man/vis.color.on.subject.Rd man/vis.coloredmesh.Rd man/vis.coloredmeshes.Rd man/vis.coloredmeshes.rotating.Rd man/vis.colortable.legend.Rd man/vis.data.on.fsaverage.Rd man/vis.data.on.group.native.Rd man/vis.data.on.group.standard.Rd man/vis.data.on.subject.Rd man/vis.export.from.coloredmeshes.Rd man/vis.fs.surface.Rd man/vis.group.annot.Rd man/vis.group.coloredmeshes.Rd man/vis.group.morph.native.Rd man/vis.group.morph.standard.Rd man/vis.labeldata.on.subject.Rd man/vis.mask.on.subject.Rd man/vis.path.along.verts.Rd man/vis.region.values.on.subject.Rd man/vis.renderable.Rd man/vis.rotated.coloredmeshes.Rd man/vis.subject.annot.Rd man/vis.subject.label.Rd man/vis.subject.morph.native.Rd man/vis.subject.morph.standard.Rd man/vis.symmetric.data.on.subject.Rd man/vislayout.from.coloredmeshes.Rd man/vol.boundary.box.Rd man/vol.boundary.box.apply.Rd man/vol.boundary.mask.Rd man/vol.hull.Rd man/vol.imagestack.Rd man/vol.intensity.to.color.Rd man/vol.mask.from.segmentation.Rd man/vol.merge.Rd man/vol.overlay.colors.from.activation.Rd man/vol.overlay.colors.from.colortable.Rd man/vol.plane.axes.Rd man/vol.planes.Rd man/vol.slice.Rd man/vol.vox.from.crs.Rd man/volvis.contour.Rd man/volvis.lightbox.Rd man/volvis.voxels.Rd man/vox2ras_tkr.Rd man/write.group.morph.standard.sf.Rd man/write.region.aggregated.Rd man/write.region.values.Rd man/write.region.values.fsaverage.Rd tests/testthat.R tests/testthat/helper-functions.R tests/testthat/test-atlas.R tests/testthat/test-brainview_magic.R tests/testthat/test-cbar.R tests/testthat/test-coloredmesh.R tests/testthat/test-curvature.R tests/testthat/test-export.R tests/testthat/test-fsdir_abstraction_group.R tests/testthat/test-fsdir_abstraction_subject.R tests/testthat/test-helpers.R tests/testthat/test-mesh_helpers.R tests/testthat/test-metadata_io.R tests/testthat/test-morph_agg.R tests/testthat/test-morph_atlas_agg.R tests/testthat/test-morph_concat.R tests/testthat/test-rglactions.R tests/testthat/test-seg_stats.R tests/testthat/test-spherical.R tests/testthat/test-vis.R tests/testthat/test-vis_group.R tests/testthat/test-vis_meshes.R tests/testthat/test-vis_multiview.R tests/testthat/test-vis_surface_background.R tests/testthat/test-vis_volume.R tests/testthat/test-vis_volume_3d.R tests/testthat/test-volume.R vignettes/fsbrain.Rmd vignettes/fsbrain_faq.Rmd vignettes/fsbrain_vol.Rmd web/Rmd_web_examples/examples.Rmd web/Rmd_web_examples/examples_adv.Rmd web/examples/facecheck.R web/examples/medial_mask.R web/fsbrain_movies.md web/fsbrain_volume.md