vol.overlay.colors.from.colortable: Compute voxel colors based on colortable.

In neuroconductor/fsbrain: Managing and Visualizing Brain Surface Data

Description

Use the intensity values of the voxels in volume and lookup the respective colors in a colortable.

Usage

vol.overlay.colors.from.colortable(
  volume,
  colortable,
  ignored_struct_indices = c(),
  ignored_struct_names = c("unknown", "Unknown")
)

Arguments

volume	numeric 3D array, the values should be integers present in the 'struct_index' column of the colortable. All other values will be assigned 'NA' as a color.
colortable	a colortable, as returned by read.fs.colortable.
ignored_struct_indices	integer vector, 'struct_index' entries in the colortable that should be ignored
ignored_struct_names	vector of character strings, 'struct_name' entries in the colortable that should be ignored. Can be combined with 'ignored_struct_indices'.

Value

character string 3D array, the colors. Voxels in the volume which were not matched by the colortable are set to 'NA' in it.

neuroconductor/fsbrain documentation built on Sept. 16, 2020, 2:30 p.m.