ggseg: ggseg: Plot brain segmentations with ggplot and plotly
In neuroconductor/ggseg: Plotting Tool for Brain Atlases

Description Usage Arguments Details Value Author(s) See Also Examples

Plotting results from analyses done on data derived from brain segmentations is a common need, but may be quite laborious. Results from such analyses are usually easier to interpret if the plot can mimmick the shape and position in the brain it represents.

ggseg plots and returns a ggplot object of plotted aparc regions.

ggseg(
  .data = NULL,
  atlas = "dk",
  position = "dispersed",
  view = NULL,
  hemisphere = NULL,
  adapt_scales = TRUE,
  ...
)

`.data`	A .data.frame to use for plot aesthetics. Should include a column called "region" corresponding to aparc regions.
`atlas`	Either a string with the name of atlas to use, or a .data.frame containing atlas information (i.e. pre-loaded atlas).
`position`	String choosing how to view the .data. Either "dispersed"[default] or "stacked".
`view`	String to choose view of the .data. Any of c("lateral","medial")[default].
`hemisphere`	String to choose hemisphere to plot. Any of c("left","right")[default].
`adapt_scales`	if `TRUE`, then the axes will be hemisphere without ticks. If `FALSE`, then will be latitude longitude values. Also affected by `position` argument
`...`	other options sent to geom_polygon for plotting, including mapping aes (cannot include x, y, and group aethetics).

This package contains data from various brain parcellations, with convenient functions to inspect the results directly on a brain-plot wither with ggplot (2D polygons) or plotly (3d meshes).

'dk': The Desikan-Killiany Cortical Atlas [default], Freesurfer cortical segmentations.
'aseg': Freesurfer automatic subcortical segmentation of a brain volume

a ggplot object

Maintainer: Athanasia Mo Mowinckel a.m.mowinckel@psykologi.uio.no (ORCID)

Authors:

Didac Vidal-Piñeiro d.v.pineiro@psykologi.uio.no (ORCID)

Athanasia Mowinckel and Didac Pineiro

Useful links:

https://github.com/LCBC-UiO/ggseg
Report bugs at https://github.com/LCBC-UiO/ggseg/issues

[ggplot2][ggplot], [aes][aes], [geom_polygon][geom_polygon], [coord_fixed][coord_fixed]

library(ggplot2)
ggseg()
ggseg(mapping=aes(fill=region))
ggseg(colour="black", size=.7, mapping=aes(fill=region)) + theme_void()
ggseg(position = "stacked")
ggseg(adapt_scales = FALSE)