import_magma_files_metadata: Import MAGMA files metadata

In neurogenomics/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Import MAGMA files metadata

Description

Import metadata from the SNP-to-gene mapping files available in MAMGA_Files_Public.

Usage

import_magma_files_metadata(file_types, use_local = TRUE, verbose = TRUE)

Arguments

file_types	MAGMA file types to import. Both ".genes.out" and ".genes.raw" are needed to run MAGMA.Celltyping cell-type enrichment functions
use_local	Whether to use a local copy of the metadata. TRUEUse the metadata included with MAGMA.Celltyping (less frequently updated). FALSEImport metadata from the GitHub repository (more frequently updated).
verbose	Print messages.

neurogenomics/MAGMA_Celltyping documentation built on Feb. 25, 2025, 6:59 p.m.