tfidf_label_markers: TF-IDF label markers

In neurogenomics/scNLP: NLP for Single-cell Omics.

TF-IDF label markers

Description

Get marker genes for each cluster,

Usage

tfidf_label_markers(obj, markers, ...)

Arguments

...

Arguments passed on to run_tfidf obj Single-cell data object. reduction Name of the reduction to use (case insensitive). label_var Which cell metadata column to input to NLP analysis. cluster_var Which cell metadata column to use to identify which cluster each cell is assigned to. replace_regex Characters by which to split label_var into terms (i.e. tokens) for NLP enrichment analysis. terms_per_cluster The maximum number of words to return per cluster. force_new If NLP results are already detected the metadata, set force_new=TRUE to replace them with new results. return_all_results Whether to return just the obj with updated metadata (TRUE), or all intermediate results (FALSE). verbose Whether to print messages.

neurogenomics/scNLP documentation built on Oct. 8, 2024, 5:30 p.m.