boot_cor | Bootstrap a correlation |

convert_hapmap | Convert a hapmap to a genotype matrix |

cross_val | Run cross-validation of a training set |

filter_genos | Filter a hapmap or genotype matrix |

fixef_model_matrix | Create a fixed effect incidence matrix |

frac.xval | Fractional Cross Validation |

geno_summary | Summarize a marker matrix |

G_mat | Calculate a genomic relationship matrix from marker... |

G_PCA | Plot the principal components of a genomic relationship... |

hapmap_encoding | Change the encoding of a hapmap file |

kfold.xval | K-fold Cross Validation |

measure.het | Measure the heterozygosity of a SNP or entry |

measure.maf | Measure the minor allele frequency of a SNP |

measure.missing | Measure the missingness of a SNP or entry |

pop_predict_quick | Quicker procedures for PopVar |

ranef_model_matrix | Create a random effect incidence matrix |

resid_model_matrix | Create a residual effect covariance matrix |

s2tp_bopa_unfilt | Sample unfiltered hapmap |

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