Markov Random Fields with additional covariates

Bird.parasites | Blood parasite occurrences in New Caledonian birds. |

bootstrap_MRF | Bootstrap observations to estimate MRF parameter coefficients |

comp_rosalia_MRF | Compare MRFcov and rosalia interaction coefficients |

countzero | Count proportions of non-zero coefficients |

cv_MRF | MRF cross validation to optimise regularization parameters |

cv_MRF_diag | MRF cross validation plots to optimise regularization... |

Dipping.survey | Dipping surveys for mosquitos and aquatic species. |

MRFcov | Binary Markov Random Fields with covariates |

plotMRF_hm | Plot MRF interaction parameters as a heatmap |

plotMRF_hm_cont | Plot heatmaps of varying interaction coefficients for a... |

plotMRF_hm_factor | Plot heatmaps of varying interaction coefficients across... |

plotMRF_net_cont | Plot networks of varying interaction coefficients for a... |

predict_MRF | Predict training observations from fitted MRFcov models |

prep_MRF_covariates | Cross-multiply response and covariate variables |

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