process_input_data: Generate model input from input data frame

In nickjcroucher/progressionEstimation: R package for the estimation of microbial progression rates

Generate model input from input data frame

Description

Generate model input from input data frame

Usage

process_input_data(
  input_df,
  type = "type",
  use_strain = FALSE,
  combine_strain = FALSE,
  condense = FALSE
)

Arguments

input_df	Data frame containing details of case-carrier studies
type	Name of column in input data frame used for typing information
use_strain	Boolean specifying whether strain information should be used in addition to type information
combine_strain	Boolean specifying whether strain information should be combined with type information
condense	Boolean specifying whether repeated entries of the same type should be condensed into a single entry

Value

A list of lists used as an input to stan models

nickjcroucher/progressionEstimation documentation built on April 15, 2023, 3:53 p.m.