spectralWorkflow: Wrapper function that goes through standardization, index...

In nickmckay/specimR: R tools for working with specim sediment core hyperspectral data

Wrapper function that goes through standardization, index calculation and visualization

Description

Wrapper function that goes through standardization, index calculation and visualization

Usage

spectralWorkflow(
  directory = NA,
  indices = c("RABD615", "RABD660670", "RABD845", "R570R630", "R590R690"),
  overall.page.width = 30,
  individual.page.width = 10,
  plot.width = 8,
  core.width = 4,
  image.wavelengths = c(630, 532, 465),
  predict.image.roi = FALSE,
  imageRoi = NA,
  output.dir = NA,
  clickDepths = NA,
  overall.width = NA,
  individual.width = NA,
  width.mult = NA,
  ...
)

Arguments

...

Arguments passed on to normalize directory path to Specim core folder cmPerPixel optionally specify the number of cm per pixel. Will determine interactively if NA. (default = NA) roi rasterExtent object defining region of interest. NA will allow you to choose interactively (default = NA) output.dir optionally save output raster by specifyign the path corename optionally choose the length of the core

nickmckay/specimR documentation built on July 6, 2022, 8:09 p.m.