Analysis of Coarsely Observed Data

cd.fit | An S4 Class that stores a fitted coarse data object |

cd.fit.mcmc | An S4 Class that stores a MCMC fit coarse data object |

dgammaOff1 | Function that calculates dgamma with a offset of 1 (i.e., 1... |

dic.fit | censored survival data |

dic.fit.mcmc | Fits the distribution to the passed-in data using MCMC as... |

EMforCFR | A function to estimate the relative case fatality ratio when... |

exp.win.lengths | Exposure window lengths from an influenza outbreak at a NYC... |

fluA.inc.per | Coarse incubation period data for influenza A |

get.obs.type | Tries to guess the observation types (SIC, DIC, or exact). |

loglikhd | Negative log likelihood for a dataset of interval-censored... |

logLik-methods | Get the log-likelihood value of a 'cd.fit' or 'cd.fit.mcmc'... |

mcmc.erlang | Does a metropolis hastings for the Erlang distribution |

mcmcpack.ll | posterior log likelihood function to pass to MCMCpack sampler |

nycH1N1 | Incubation period data from New York City Public Schools,... |

pgammaOff1 | Function that calculates pgamma with a offset of 1 (i.e., 1... |

plot-methods | Plots the estimated survival function with an option to plot... |

precision.simulation | Simulate incubation period analyses with coarse data |

simulated.outbreak.deaths | Simulated case and death reports from a fictional outbreak |

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