fitSIBERonMat: fit SIBER on a matrix, one row at a time

In nickytong/SIBER: Systematic Identification of Bimodally Expressed Genes Using RNAseq Data

Description

this function enables parallel through plyr package

Usage

fitSIBERonMat(mat, model = "NL", prune = TRUE, q = 0.03,
  parallel = TRUE, core = 10)

Arguments

mat	matrix of expression, methylation and so on
model	model as in SIBER
prune	logical, whether to prune sigma1, sigma2 for with a specified percentile; this is to obtain stable BI estimate due to extremely small sigma estimate, especially in the V model
parallel	logical
core	number of cores to register for parallel computing

Value

a matrix

References

Tong, P., Chen, Y., Su, X. and Coombes, K. R. (2012). Systematic Identification of Bimodally Expressed Genes Using RNAseq Data. Bioinformatics, submitted.

nickytong/SIBER documentation built on May 23, 2019, 5:08 p.m.