build_cor_list: Builds cor_list object with default parameters

In nicohuttmann/pOmics: Framework for proteomics data analysis

Builds cor_list object with default parameters

Description

Builds cor_list object with default parameters

Usage

build_cor_list(
  data,
  min.0 = 0.5,
  normalize.method = "pqn",
  shift = 1.8,
  width = 0.3,
  seed = 123,
  similarity.method = "preserve",
  adjacency.method = "none",
  add.connectivity = F,
  connectivity.k = 20,
  connectivity.scale = T,
  plot = F
)

Arguments

data	data
min.0	threshold to keep proteins
normalize.method	method for normalization
shift	shift in standard deviations
width	width in standard deviations
seed	seed for imputation
similarity.method	method to calculate similarity matrix
adjacency.method	method to calculate adjacency matrix
add.connectivity	calculate connectivity measures
connectivity.k	max number of clusters for connectivity
connectivity.scale	scale connectivity values to cluster size
plot	print plot of correlation matrix

nicohuttmann/pOmics documentation built on Sept. 21, 2022, 9:28 a.m.