lavaan-class: Class For Representing A (Fitted) Latent Variable Model

In nietsnel/psindex: Parameter Stability Index

Description

The lavaan class represents a (fitted) latent variable model. It contains a description of the model as specified by the user, a summary of the data, an internal matrix representation, and if the model was fitted, the fitting results.

Objects from the Class

Objects can be created via the cfa, sem, growth or lavaan functions.

Slots

version:

The lavaan package version used to create this objects.

call:

The function call as returned by match.call().

timing:

The elapsed time (user+system) for various parts of the program as a list, including the total time.

Options:

Named list of options that were provided by the user, or filled-in automatically.

ParTable:

Named list describing the model parameters. Can be coerced to a data.frame. In the documentation, this is called the ‘parameter table’.

pta:

Named list containing parameter table attributes.

Data:

Object of internal class "Data": information about the data.

SampleStats:

Object of internal class "SampleStats": sample statistics

Model:

Object of internal class "Model": the internal (matrix) representation of the model

Cache:

List using objects that we try to compute only once, and reuse many times.

Fit:

Object of internal class "Fit": the results of fitting the model

boot:

List. Results and information about the bootstrap.

optim:

List. Information about the optimization.

loglik:

List. Information about the loglikelihood of the model (if maximum likelihood was used).

implied:

List. Model implied statistics.

vcov:

List. Information about the variance matrix (vcov) of the model parameters.

test:

List. Different test statistics.

h1:

List. Information about the unrestricted h1 model (if available).

baseline:

List. Information about a baseline model (often the independence model) (if available).

external:

List. Empty slot to be used by add-on packages.

Methods

coef

signature(object = "lavaan", type = "free"): Returns the estimates of the parameters in the model as a named numeric vector. If type="free", only the free parameters are returned. If type="user", all parameters listed in the parameter table are returned, including constrained and fixed parameters.

fitted.values

signature(object = "lavaan"): Returns the implied moments of the model as a list with two elements (per group): cov for the implied covariance matrix, and mean for the implied mean vector. If only the covariance matrix was analyzed, the implied mean vector will be zero.

fitted

signature(object = "lavaan"): an alias for fitted.values.

residuals

signature(object = "lavaan", type="raw"): If type="raw", this function returns the raw (=unstandardized) difference between the implied moments and the observed moments as a list of two elements: cov for the residual covariance matrix, and mean for the residual mean vector. If only the covariance matrix was analyzed, the residual mean vector will be zero. If type="cor", the observed and model implied covariance matrix is first transformed to a correlation matrix (using cov2cor), before the residuals are computed. If type="normalized", the residuals are divided by the square root of an asymptotic variance estimate of the corresponding sample statistic (the variance estimate depends on the choice for the se argument). If type="standardized", the residuals are divided by the square root of the difference between an asymptotic variance estimate of the corresponding sample statistic and an asymptotic variance estimate of the corresponding model-implied statistic. In the latter case, the residuals have a metric similar to z-values. On the other hand, they may often result in NA values; for these cases, it may be better to use the normalized residuals. For more information about the normalized and standardized residuals, see the Mplus reference below.

resid

signature(object = "lavaan"): an alias for residuals

vcov

signature(object = "lavaan"): returns the covariance matrix of the estimated parameters.

predict

signature(object = "lavaan"): compute factor scores for all cases that are provided in the data frame. For complete data only.

anova

signature(object = "lavaan"): returns model comparison statistics. This method is just a wrapper around the function lavTestLRT. If only a single argument (a fitted model) is provided, this model is compared to the unrestricted model. If two or more arguments (fitted models) are provided, the models are compared in a sequential order. Test statistics are based on the likelihood ratio test. For more details and further options, see the lavTestLRT page.

update

signature(object = "lavaan", model, add, ..., evaluate=TRUE): update a fitted lavaan object and evaluate it (unless evaluate=FALSE). Note that we use the environment that is stored within the lavaan object, which is not necessarily the parent frame. The add argument is analogous to the one described in the lavTestScore page, and can be used to add parameters to the specified model rather than passing an entirely new model argument.

nobs

signature(object = "lavaan"): returns the effective number of observations used when fitting the model. In a multiple group analysis, this is the sum of all observations per group.

logLik

signature(object = "lavaan"): returns the log-likelihood of the fitted model, if maximum likelihood estimation was used. The AIC and BIC methods automatically work via logLik().

show

signature(object = "lavaan"): Print a short summary of the model fit

summary

signature(object = "lavaan", header = TRUE, fit.measures=FALSE, estimates = TRUE, ci = FALSE, fmi = FALSE, standardized = FALSE, cov.std = TRUE, rsquare=FALSE, std.nox = FALSE, modindices=FALSE, ci=FALSE, nd = 3L): Print a nice summary of the model estimates. If header = TRUE, the header section (including fit measures) is printed. If fit.measures = TRUE, additional fit measures are added to the header section. If estimates = TRUE, print the parameter estimates section. If ci = TRUE, add confidence intervals to the parameter estimates section. If fmi = TRUE, add the fmi (fraction of missing information) column, if it is available. If standardized=TRUE, the standardized solution is also printed. If rsquare=TRUE, the R-Square values for the dependent variables in the model are printed. If std.nox = TRUE, the std.all column contains the the std.nox column from the parameterEstimates() output. If modindices=TRUE, modification indices are printed for all fixed parameters. The argument nd determines the number of digits after the decimal point to be printed (currently only in the parameter estimates section.) Nothing is returned (use lavInspect or another extractor function to extract information from a fitted model).

References

Yves Rosseel (2012). lavaan: An R Package for Structural Equation Modeling. Journal of Statistical Software, 48(2), 1-36. URL http://www.jstatsoft.org/v48/i02/.

Standardized Residuals in Mplus. Document retrieved from URL http://www.statmodel.com/download/StandardizedResiduals.pdf

See Also

cfa, sem, growth, fitMeasures, standardizedSolution, parameterEstimates, lavInspect, modindices

Examples

HS.model <- ' visual  =~ x1 + x2 + x3
              textual =~ x4 + x5 + x6
              speed   =~ x7 + x8 + x9 '

fit <- cfa(HS.model, data=HolzingerSwineford1939)

summary(fit, standardized=TRUE, fit.measures=TRUE, rsquare=TRUE)
fitted(fit)
coef(fit)
resid(fit, type="normalized")

nietsnel/psindex documentation built on June 22, 2019, 10:56 p.m.