R/data.R

In nikopech/empdata: A 975-sample subset with 150-bp length sequences of the EMP (Earth Microbiome Project) dataset

#' EMP's 2k sample-subset with 150bp sequences.
#'
#' A sparse matrix containing 150bp-sequence counts of the EMP's subset of 2,000 samples.
#'
"emp.data.2k150bp"

#' EMP's 2k sample-subset with 100bp sequences.
#'
#' A sparse matrix containing 100bp-sequence counts of the EMP's subset of 2,000 samples.
#'
"emp.data.2k100bp"

#' EMP's 2k sample-subset with 90bp sequences.
#'
#' A sparse matrix containing 90bp-sequence counts of the EMP's subset of 2,000 samples.
#'
#'
"emp.data.2k90bp"



#' EMP's 2k sample-subset; taxonomy of 150bp sequences.
#'
#' A data table containing 150bp-sequences and the identified taxonomic levels.
#'
"obs.metadata.2k150bp"

#' EMP's 2k sample-subset; taxonomy of 100bp sequences.
#'
#' A data table containing 100bp-sequences and the identified taxonomic levels.
#'
"obs.metadata.2k100bp"

#' EMP's 2k sample-subset; taxonomy of 90bp sequences.
#'
#' A data table containing 90bp-sequences and the identified taxonomic levels.
#'
"obs.metadata.2k90bp"


#' EMP's 2k sample-subset; sample meta data.
#'
#' A data table contaiing sample meta data for EMP's 2k-subset.
#'
"sample.metadata.sub2k"