nikopech/lineagespot: Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing
Lineagespot is a framework written in R, and aims to identify SARS-CoV-2 related mutations based on a single (or a list) of variant(s) file(s) (i.e., variant calling format). The method can facilitate the detection of SARS-CoV-2 lineages in wastewater samples using next generation sequencing, and attempts to infer the potential distribution of the SARS-CoV-2 lineages.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | Sequencing VariantAnnotation VariantDetection |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 0.99.8 |
| URL | https://github.com/BiodataAnalysisGroup/lineagespot |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
