get_lineage_report: get_lineage_report
In nikopech/lineagespot: Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing

Retrieve information about lineages' variants vie outbreak.info's API

get_lineage_report(
  lineages,
  base.url = "https://api.outbreak.info/genomics/lineage-mutations?pangolin_lineage="
)

`lineages`	a character vector containing the names of the lineages of interest
`base.url`	The base API URL used to search for lineage reports Default value is "https://api.outbreak.info/genomics/lineage-mutations?pangolin_lineage="

A list of data table elements of lineage reports

1	get_lineage_report(lineages = c("B.1.1.7", "B.1.617.2"))

nikopech/lineagespot documentation built on Dec. 28, 2021, 12:15 a.m.

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