Files in nikosbosse/epipredictr
What the Package Does (One Line, Title Case)
.Rbuildignore
.Rhistory
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
NAMESPACE
R/epipredictr-package.R
R/forecast.R
R/forecast.md
R/functions_master_thesis.R
R/incidence_prediction.R
R/models.R
R/old_stanparts.R
R/plotting.R
R/scoring.R
R/stanmodels.R
R/utilities.R
README.md
Read-and-delete-me
_config.yml
configure
configure.win
epipredictr.Rproj
inst/R/sandbox.R
inst/R/sandbox.md
inst/bash/update_results.sh
inst/include/stan_meta_header.hpp
inst/report/report.Rmd
inst/report/report.html
inst/report/report.md
inst/stan/bsts.rds
inst/stan/bsts.stan
inst/stan/bsts_local_trend.rds
inst/stan/bsts_local_trend.stan
inst/stan/bsts_sampled_y.stan
inst/stan/epiestim.rds
inst/stan/epiestim.stan
inst/stan/include/license.stan
inst/stan/lin_reg_gamma_noise_around_y.rds
inst/stan/lin_reg_gamma_noise_around_y.stan
inst/stan/lin_reg_sampled_y.rds
inst/stan/lin_reg_sampled_y.stan
inst/stan/linear_regression.rds
inst/stan/linear_regression.stan
man/.Rhistory
man/add_average_model.Rd
man/analysis_one_country.Rd
man/bsts.Rd
man/bsts_local_trend.Rd
man/bsts_wrapper.Rd
man/compare_bsts_models.Rd
man/compare_forecasts.Rd
man/epipredictr-package.Rd
man/extract_samples.Rd
man/fit_iteratively.Rd
man/fit_stan_model.Rd
man/forecast_one_country.Rd
man/forecast_table.Rd
man/full_analysis.Rd
man/get_data.Rd
man/linear_regression.Rd
man/my_setup.Rd
man/plot_forecast_compare.Rd
man/plot_pred_vs_true.Rd
man/plot_prior_vs_posterior.Rd
results/plots/metrics_by_country/metrics_by_days_ahead_australia.png
results/plots/metrics_by_country/metrics_by_days_ahead_austria.png
results/plots/metrics_by_country/metrics_by_days_ahead_belgium.png
results/plots/metrics_by_country/metrics_by_days_ahead_canada.png
results/plots/metrics_by_country/metrics_by_days_ahead_china-excluding-hubei.png
results/plots/metrics_by_country/metrics_by_days_ahead_china.png
results/plots/metrics_by_country/metrics_by_days_ahead_france.png
results/plots/metrics_by_country/metrics_by_days_ahead_germany.png
results/plots/metrics_by_country/metrics_by_days_ahead_hong-kong.png
results/plots/metrics_by_country/metrics_by_days_ahead_hubei.png
results/plots/metrics_by_country/metrics_by_days_ahead_iran.png
results/plots/metrics_by_country/metrics_by_days_ahead_italy.png
results/plots/metrics_by_country/metrics_by_days_ahead_japan.png
results/plots/metrics_by_country/metrics_by_days_ahead_malaysia.png
results/plots/metrics_by_country/metrics_by_days_ahead_netherlands.png
results/plots/metrics_by_country/metrics_by_days_ahead_norway.png
results/plots/metrics_by_country/metrics_by_days_ahead_singapore.png
results/plots/metrics_by_country/metrics_by_days_ahead_south-korea.png
results/plots/metrics_by_country/metrics_by_days_ahead_spain.png
results/plots/metrics_by_country/metrics_by_days_ahead_sweden.png
results/plots/metrics_by_country/metrics_by_days_ahead_switzerland.png
results/plots/metrics_by_country/metrics_by_days_ahead_united-kingdom.png
results/plots/metrics_by_country/metrics_by_days_ahead_united-states.png
results/plots/metrics_by_days_ahead_across_regions.png
results/plots/metrics_by_days_ahead_across_regions_grouped.png
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/epipredictr.so
src/stanExports_bsts.cc
src/stanExports_bsts.h
src/stanExports_bsts.o
src/stanExports_bsts_local_trend.cc
src/stanExports_bsts_local_trend.h
src/stanExports_bsts_local_trend.o
src/stanExports_bsts_sampled_y.cc
src/stanExports_bsts_sampled_y.h
src/stanExports_bsts_sampled_y.o
src/stanExports_epiestim.cc
src/stanExports_epiestim.h
src/stanExports_epiestim.o
src/stanExports_lin_reg_gamma_noise_around_y.cc
src/stanExports_lin_reg_gamma_noise_around_y.h
src/stanExports_lin_reg_gamma_noise_around_y.o
src/stanExports_lin_reg_sampled_y.cc
src/stanExports_lin_reg_sampled_y.h
src/stanExports_lin_reg_sampled_y.o
src/stanExports_linear_regression.cc
src/stanExports_linear_regression.h
src/stanExports_linear_regression.o
vignettes/.gitignore
vignettes/figure/Italy-1.png
vignettes/figure/Japan-1.png
vignettes/figure/Scoring-boxplot-1.png
vignettes/figure/Scoring-lineplot-1.png
vignettes/figure/Scoring-plot-1.png
vignettes/figure/Singapore-1.png
vignettes/figure/South-Korea-1.png
vignettes/figure/Summary-results-graph-1.png
vignettes/figure/do-analysis-1.png
vignettes/figure/japan.png
vignettes/figure/load-data-1.png
vignettes/figure/load-data-2.png
vignettes/figure/load-data-3.png
vignettes/figure/load-data-4.png
vignettes/figure/load-data-5.png
vignettes/figure/load-data-6.png
vignettes/figure/load-data-7.png
vignettes/figure/load-data-8.png
vignettes/figure/singapore.png
vignettes/figure/unnamed-chunk-1-1.png
vignettes/prediction_report.Rmd
vignettes/prediction_report.md
