pic_calc: Polymorphic Information Content calculation for genind...
In nikostourvas/PopGenUtils: A collection of useful functions to deal with genetic data in R
pic_calc R Documentation
Polymorphic Information Content calculation for genind objects
Description
This function is a simple wrapper of the PIC function from
polysat package. It allows to quickly calculate Polymorphic Information
Content or PIC from a genind object. Check PIC help page under polysat
package for references.
Usage
pic_calc(obj, ploidy = 2, bypop = FALSE)
Arguments
obj
a codominant genind object
ploidy
Integer. The ploidy of the data.
bypop
Boolean, indicating whether to calculate PIC for each population
and overall or only overall.
Value
a data.frame with PIC values (per locus & mean) for each population
and overall
Author(s)
Nikolaos Tourvas
nikostourvas/PopGenUtils documentation built on April 23, 2022, 1:14 p.m.
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| pic_calc | R Documentation |
Polymorphic Information Content calculation for genind objects
Description
This function is a simple wrapper of the PIC function from polysat package. It allows to quickly calculate Polymorphic Information Content or PIC from a genind object. Check PIC help page under polysat package for references.
Usage
pic_calc(obj, ploidy = 2, bypop = FALSE)
Arguments
obj |
a codominant genind object |
ploidy |
Integer. The ploidy of the data. |
bypop |
Boolean, indicating whether to calculate PIC for each population and overall or only overall. |
Value
a data.frame with PIC values (per locus & mean) for each population and overall
Author(s)
Nikolaos Tourvas
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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