probeGen: Function to generate probes for PatH-Cap tool

In nirmalya-broad/PatHCapProbes: Generate probes for PatH-Cap

Description

This is the main function to generate probes for hybrid-capture.

Usage

probeGen(fasta_file, gff_file, probes_file, add_adapt = FALSE,
  pre_str = "", suf_str = "")

Arguments

fasta_file	Fasta file for the bacterial genome sequence
gff_file	Gff file for the bacterial genome annotation
probes_file	Path to text file where probes would be written
pre_str	[Optional] Sequence of prefix_adapter, required when add_apt is set to TRUE
suf_str	[Optional] Sequence of suffix_adapter, required when add_apt is set to TRUE
add_apt	[Optional] Whether adapters would be added or not

Examples

probeGen()

nirmalya-broad/PatHCapProbes documentation built on April 19, 2020, 6:12 p.m.