fasta.out: A function to write a fasta file

In nishanmudalige/BOLD.R: A package to interface with the Barcode of Life Database through R

A function to write a fasta file

Description

Write a fasta file using datafram with data obtained from BOLD. The file is written by marker code.

Usage

fasta.out(x.df, marker.name, output.name = "output", remove.empty = FALSE, nbchar = 60)

Arguments

x.df	A dataframe containing data obtained from BOLD.
marker.name	A DNA marker.
output.name	The name of the output file. The extension ".fasta" is added by default.
remove.empty	Remove rows which do not have an entry for the chosen marker type.
nbchar	The number of characters per line.

Value

none.

Author(s)

Nishan Mudalige

Examples

example.df <- get.public(container="PRT")

fasta.out(example.df, "COI-5P_nucraw", output.name = "testfile1")

fasta.out(example.df, "COI-5P_nucraw", output.name = "testfile2", remove.empty=TRUE)

nishanmudalige/BOLD.R documentation built on July 15, 2022, 3:33 a.m.