sig_adjust_confidences: Adjust Signatera positive calls
In njjms/nicks: Basic Functions for Biostatistics
View source: R/adjusted_signatera_confidence.R
sig_adjust_confidences R Documentation
Adjust Signatera positive calls
Description
New updated threshold for C>A/G>T and C>T/G>A from 0.97→ 0.98
Usage
sig_adjust_confidences(input_df, amplicon_id = TRUE)
Arguments
amplicon_id
defaults to TRUE. Adds "ref", "mut" columns based on optional amplicon_id column
df
containing columns for "ref", "mut", "confidence"
Value
df with "adjustedMutationPresent" column added
Examples
adjust_sig_positives(df)
njjms/nicks documentation built on May 4, 2022, 8:10 a.m.
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View source: R/adjusted_signatera_confidence.R
| sig_adjust_confidences | R Documentation |
Adjust Signatera positive calls
Description
New updated threshold for C>A/G>T and C>T/G>A from 0.97→ 0.98
Usage
sig_adjust_confidences(input_df, amplicon_id = TRUE)
Arguments
amplicon_id |
defaults to TRUE. Adds "ref", "mut" columns based on optional amplicon_id column |
df |
containing columns for "ref", "mut", "confidence" |
Value
df with "adjustedMutationPresent" column added
Examples
adjust_sig_positives(df)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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