tests/testthat/_snaps/estimate-setting-contacts.md

In njtierney/conmat: Builds Contact Matrices using GAMs and Population Data

estimate_setting_contacts works

Code
  estimate_setting_contacts(contact_data_list = contact_data_cut,
    survey_population = get_polymod_population(), prediction_population = get_polymod_population(),
    age_breaks = c(seq(0, 10, by = 5), Inf), per_capita_household_size = NULL)
Message

  -- Setting Prediction Matrices -------------------------------------------------
Output

Message
  A list of matrices containing the model predicted contact rate between ages in
  each setting.
Output

Message
  There are 3 age breaks, ranging 0-10+ years, with a regular 5 year interval
Output

Message
  * home: a 3x3 <matrix>
  * work: a 3x3 <matrix>
  * school: a 3x3 <matrix>
  * other: a 3x3 <matrix>
  * all: a 3x3 <matrix>
  i Access each <matrix> with `x$name`
  i e.g., `x$home`

estimate_setting_contacts works with different demographic data

Code
  estimate_setting_contacts(contact_data_list = contact_data_cut,
    survey_population = get_polymod_population(), prediction_population = get_polymod_population(),
    age_breaks = c(seq(0, 10, by = 5), Inf), school_demographics = conmat_original_school_demographics,
    work_demographics = conmat_original_work_demographics)
Message

  -- Setting Prediction Matrices -------------------------------------------------
Output

Message
  A list of matrices containing the model predicted contact rate between ages in
  each setting.
Output

Message
  There are 3 age breaks, ranging 0-10+ years, with a regular 5 year interval
Output

Message
  * home: a 3x3 <matrix>
  * work: a 3x3 <matrix>
  * school: a 3x3 <matrix>
  * other: a 3x3 <matrix>
  * all: a 3x3 <matrix>
  i Access each <matrix> with `x$name`
  i e.g., `x$home`

njtierney/conmat documentation built on April 17, 2025, 10:27 p.m.