tests/testthat/_snaps/generate-ngm.md

In njtierney/conmat: Builds Contact Matrices using GAMs and Population Data

NGMs from each generate_ngm type return the same object

Code
  perth_ngm_lga
Message

  -- NGM Setting Matrices --------------------------------------------------------
Output

Message
  A list of matrices, each <matrix> containing the number of newly infected
  individuals for a specified age group.
Output

Message
  There are 16 age breaks, ranging 0-75+ years, with a regular 5 year interval
Output

Message
  * home: a 16x16 <matrix>
  * school: a 16x16 <matrix>
  * work: a 16x16 <matrix>
  * other: a 16x16 <matrix>
  * all: a 16x16 <matrix>
  i Access each <matrix> with `x$name`
  i e.g., `x$home`

Code
  perth_ngm
Message

  -- NGM Setting Matrices --------------------------------------------------------
Output

Message
  A list of matrices, each <matrix> containing the number of newly infected
  individuals for a specified age group.
Output

Message
  There are 16 age breaks, ranging 0-75+ years, with a regular 5 year interval
Output

Message
  * home: a 16x16 <matrix>
  * school: a 16x16 <matrix>
  * work: a 16x16 <matrix>
  * other: a 16x16 <matrix>
  * all: a 16x16 <matrix>
  i Access each <matrix> with `x$name`
  i e.g., `x$home`

Code
  perth_ngm_oz
Message

  -- NGM Setting Matrices --------------------------------------------------------
Output

Message
  A list of matrices, each <matrix> containing the number of newly infected
  individuals for a specified age group.
Output

Message
  There are 16 age breaks, ranging 0-75+ years, with a regular 5 year interval
Output

Message
  * home: a 16x16 <matrix>
  * school: a 16x16 <matrix>
  * work: a 16x16 <matrix>
  * other: a 16x16 <matrix>
  * all: a 16x16 <matrix>
  i Access each <matrix> with `x$name`
  i e.g., `x$home`

generate_ngm fails when given wrong age breaks

Code
  generate_ngm(perth_contact, age_breaks = age_breaks_0_85, R_target = 1.5)
Condition
  Error in `check_age_breaks()`:
  ! Age breaks must be the same, but they are different:
           `x[14:17]`: 65 70 75 Inf       
  `age_breaks[14:19]`: 65 70 75  80 85 Inf
  i You can check the age breaks using `age_breaks(<object>)`

njtierney/conmat documentation built on April 17, 2025, 10:27 p.m.