NEWS.md

In njtierney/mmcc: tidy mcmc.list using data.table

mmcc 0.0.9.9000 (2021/09/30)

New Features

• Implement dimension amounts for n_var, n_iter and n_chain #33
• Implement n_sims - #50

mmcc 0.0.8.9600 (2019/02/13)

New Features

• Implemented effective sample size diagnostic, diag_ess, (#34) which does not aggregate over chains

mmcc 0.0.8.9500 (2019/02/13)

Minor Changes

• Minor speed-ups (1.5x) in diag_autocorr gained by pulling the two lapply calls together and separating the chain and parameter values from the id column simultaneously.

mmcc 0.0.8.9400 (2019/02/01)

New Features

• added Sam's diag_autocorr function to calculate autocorrelation.
• mcmc_to_dt is now and S3 method, removing mcmc_to_dt_stan(), it just works on stan models now. And mcmc_to_dt.stan() is about 5 times faster.

Minor Changes

• added example_jags_model as an example data set to use in package
• added example_stan_model as an example data set to use in package
• added tests for thin_dt() and glance.dic()

mmcc 0.0.8.9200 (2019/01/30)

New Features

• Add Haran et al's batch means function to diagnostics (#25)

Minor Changes

• Updated to use generics instead of importing broom
• Removed greta vignette as the python/tensorflow build problems were stopping he package from building properly
• added test coverage

mmcc 0.0.7.9000 (2018/08/03)

New Features

• Added greta vignette
• Added examples to the thin_dt, glance.mcmc.list, and other functions.

mmcc 0.0.6.9100 (2017/11/08)

New Features

• added draft function for stan - mcmc_to_dt_stan, for cleaning up output from STAN.

mmcc 0.0.6.9001 (2017/06/13)

Minor Changes

• changes name to mmcc

dsmcmc 0.0.5.9001 (2017/06/13)

Minor Changes

• changes name to mmcc
• added thin_dt, to allow post hoc thinning of chains
• updated linear model vignette to show off thin_dt with trace plots

dsmcmc 0.0.5.9000 (2017/06/12)

Minor Changes

• Changes tidy summaries to be lowercase.
• Added broom to Depends to make tidy.mcmc.list to work with tidy, since @importFrom broom tidy didn't really seem to work, and I want to be able to just call tidy.
• no longer import from stats
• Updated vignette to use tidy instead of tidy.mcmc.list
• Vignette and README style changes in line with tidyverse style.
• Use snake_case where possible.
• Added more whitespace to functions.

dsmcmc 0.0.4 (2017/06/10)

New Features

• New vignette showing linear regression
• Suggests now includes rjags and ggplot2 for vignette
• Column selection now uses regular expression matching so that matching on variables from array allows beta to extract beta[1,1], beta[1,2], etc. but not beta.0.

dsmcmc 0.0.3 (2017/06/10)

New Features

• Summary of mcmc.list now done with a tidy method
• Can now select which columns are to be tidied/summarised
• mcmc_to_dt can be requested to summarise over all chains or by each chain.

dsmcmc 0.0.1 (2016/09/19)

New features

• Added tidy_mcmc to tidy up mcmc.list objects
• Added a NEWS.md file to track changes to the package.

njtierney/mmcc documentation built on Oct. 5, 2021, 12:14 a.m.