Files in nkurzaw/phosphoTPP
Functions and analysis workflow for phosphoTPP datasets
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/functions.R
README.Rmd
README.md
dat/TPP-TR_config_phospho.xlsx
dat/huang_mapping.txt
dat/ochoa_mapping.txt
inst/figures/README-compareTmOtherDat-1.png
inst/figures/README-deltaTmDist-1.png
inst/figures/README-phoshoReps-1.png
inst/figures/README-s2iComparison-1.png
inst/figures/README-savitskiPhosphoReps-1.png
inst/figures/README-savitskiUnModReps-1.png
inst/figures/README-unmodPhosphoScatter-1.png
inst/figures/README-unmodReps-1.png
inst/figures/README-unnamed-chunk-17-1.png
inst/figures/README-unnamed-chunk-20-1.png
inst/figures/README-unnamed-chunk-23-1.png
inst/figures/README-unnamed-chunk-31-1.png
inst/figures/README-unnamed-chunk-33-1.png
inst/figures/README-unnamed-chunk-35-1.png
inst/figures/README-unnamed-chunk-36-1.png
man/chooseCoherentGeneNames.Rd
man/countAtLeast.Rd
man/fitMeltcurveModelAndEval.Rd
man/getNormFactors4Data.Rd
man/getPhosphoSiteId.Rd
man/getProb.Rd
man/lowerFn.Rd
man/plotDiffPhosphoMeltcurve.Rd
man/plotDiffPhosphoSpline.Rd
references.bib
vignettes/reproduce_figures.Rmd
vignettes/reproduce_figures_revised.Rmd
