getNormFactors4Data: Derive normalization factors for replicates

In nkurzaw/phosphoTPP: Functions and analysis workflow for phosphoTPP datasets

Description

Derive normalization factors for replicates

Usage

getNormFactors4Data(
  pep_tab,
  temperature_anno,
  n_rep,
  filter_criteria = list(rel_fc_127H_low = 0, rel_fc_129H_low = 0.4, rel_fc_129H_high =
    0.6, rel_fc_130H_low = 0, rel_fc_130H_high = 0.3, rel_fc_131L_low = 0,
    rel_fc_131L_high = 0.2)
)

Arguments

pep_tab	data frame with information on qunatified peptides
temperature_anno	data frame indication which TMT channel corresponds to which temperature
n_rep	number of replicates peptides used for normalization should be found in
filter_criteria	list of filtering criteria that should be applied to retrived a overlapping high quality dataset for retriving normalization factors

nkurzaw/phosphoTPP documentation built on Aug. 21, 2021, 5:12 p.m.