NEWS.md

In nldoc/nlrx: Setup, Run and Analyze 'NetLogo' Model Simulations from 'R' via 'XML'

nlrx 0.4.5

Functionality

• No functionality updates

Bugfixes

• documentation update to fix CRAN check notes

nlrx 0.4.4

Functionality

• added support to download_netLogo() for up to NetLogo version 6.3.0
• adjusted test_nlrx() to work with new NetLogo directory structure (6.3.0)
• added writeRDS parameter to run_nl_all() for storing intermediate results

Bugfixes

• updating Java Version Requirement in DESCRIPTION
• refactoring download_netlogo function
• Fix readr problems with util_runnl() (deprecated in path argument in write_lines)
• Fix path problems
• Fix to allow for list output in agent variables (metrics.turtles, metrics.patches, metrics.links)

nlrx 0.4.3

Functionality

• added test_nlrx() function to check functionality of the package
• added support to download_netLogo() for NetLogo version 6.2.0

Bugfixes

• changed timestamp for nldoc function from lubridate to base date
• fixed an error in the function parser of the nldoc procedure
• fixed bug in calculation of number of computed runs in print_nl()

nlrx 0.4.2

Functionality

• added option to run_nl_one that allows to store results as rds files
• added eval_simoutput option to check for missing combinations of siminputrow and random-seeds
• added support for progressr progress bars for run_nl_all function (details see further notes vignette) and removed the silent parameter of the run_nl_all function

Bugfixes

• hotfix for another dependency on external files in nldoc roxygen examples
• small bugfix in analyze_morris: A warning is now thrown if NA are present in the simulation data
• bugfix in random seed generator
• bugfix for sobol simulation design when sobolorder is higher than the available number of variables
• analyze_nl now prints a warning if missing combinations were detected in the simulation output
• updated testdata
• user rights for temporary sh scripts are now set correctly

nlrx 0.4.1

• fixed dependency on external file source in nldoc automated tests
• these files are now included in the package
• added link to documentation website in description

nlrx 0.4.0

• Added new simdesigns simdesign_ABCmcmc_Marjoram, simdesign_ABCmcmc_Marjoram_original and simdesign_ABCmcmc_Wegmann to perform approximate bayesian computation
• Added print function for nl objects
• Added dependencies: crayon, EasyABC
• Added pandoc to system requirements
• Added additional pandoc_available() check for nldoc function
• Added support to download_netLogo() for NetLogo version 6.1.1
• Added new vignette showing an example for approximate bayesian computation with nlrx
• Updated "Sensitivity Analyses with nlrx"" vignette
• Updated "Advanced Configuration" vignette
• Updated package tests

nlrx 0.3.0

• Added support for self-defined evaluation functions to optimization functions simdesign_GenAlg and simdesign_GenSA.
• Added support to simdesign_simple() for models without any GUI parameters
• Added support to download_netLogo() for NetLogo version 6.1.0
• Added new vignette showing an example for Sensitivity Analysis with nlrx.
• Added new vignette showing an example for Optimization with nlrx.
• Updated "Advanced Configuration" vignette.
• Updated citation information of the package.
• Hotfix for unnest_simoutput(). In the previous package version, under some circumstances an error occured due to NA data.
• Corrected spelling errors in some vignettes and documentation files.

nlrx 0.2.0

• nl_to_raster() hotfix

nlrx 0.1.0

• First release to CRAN.

nldoc/nlrx documentation built on Sept. 8, 2024, 6:39 a.m.