DESeq2-package: DESeq2 package for differential analysis of count data
In nlhuong/ZeroInflatedDESeq2: Differential gene expression analysis based on the negative binomial distribution
Description
Author(s)
References
Description
The main functions for differential analysis are DESeq and
results. See the examples at DESeq for basic analysis steps.
Two transformations offered for count data are
the "regularized logarithm", rlog,
and varianceStabilizingTransformation.
For more detailed information on usage, see the package vignette, by typing
vignette("DESeq2"), or the workflow linked to on the first page
of the vignette.
Author(s)
Michael Love, Wolfgang Huber, Simon Anders
References
DESeq2 reference:
Michael I Love, Wolfgang Huber, Simon Anders: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 2014, 15:550. http://dx.doi.org/10.1186/s13059-014-0550-8
DESeq reference:
Simon Anders, Wolfgang Huber: Differential expression analysis for sequence count data. Genome Biology 2010, 11:106. http://dx.doi.org/10.1186/gb-2010-11-10-r106
nlhuong/ZeroInflatedDESeq2 documentation built on May 23, 2019, 9:06 p.m.
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Description Author(s) References
Description
The main functions for differential analysis are DESeq and
results. See the examples at DESeq for basic analysis steps.
Two transformations offered for count data are
the "regularized logarithm", rlog,
and varianceStabilizingTransformation.
For more detailed information on usage, see the package vignette, by typing
vignette("DESeq2"), or the workflow linked to on the first page
of the vignette.
Author(s)
Michael Love, Wolfgang Huber, Simon Anders
References
DESeq2 reference:
Michael I Love, Wolfgang Huber, Simon Anders: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 2014, 15:550. http://dx.doi.org/10.1186/s13059-014-0550-8
DESeq reference:
Simon Anders, Wolfgang Huber: Differential expression analysis for sequence count data. Genome Biology 2010, 11:106. http://dx.doi.org/10.1186/gb-2010-11-10-r106
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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