read_fastq: Reads fastq file and puts into tibble
In nmajoraz/fastqR: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Examples
Description
Reads a fastq file and puts into a tibble with one row per fastq entry.
Usage
1
Arguments
file
The fastq file to read from. Requires extension of .fq.
Value
A tibble with 4 columns.
1) ID: The sequence from the first line minus the "@"
2) Bases: The bases from the second line
3) Qualities: The quality string from the fourth line
4) GC: The GC content of the bases
Examples
1
read_fastq(system.file("good.fq", package = "fastqR"))
nmajoraz/fastqR documentation built on Jan. 17, 2021, 1:19 a.m.
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Description Usage Arguments Value Examples
Description
Reads a fastq file and puts into a tibble with one row per fastq entry.
Usage
1 |
Arguments
file |
The fastq file to read from. Requires extension of .fq. |
Value
A tibble with 4 columns.
1) ID: The sequence from the first line minus the "@"
2) Bases: The bases from the second line
3) Qualities: The quality string from the fourth line
4) GC: The GC content of the bases
Examples
1 | read_fastq(system.file("good.fq", package = "fastqR"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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