revdep/failures.md

In nmutai/patchwork: The Composer of Plots

NA

• Version: NA
• Source code: https://github.com/cran/NA
• Number of recursive dependencies: 0

Run cloud_details(, "NA") for more info

Error before installation

Devel

CRAN

Seurat

• Version: 3.2.2
• Source code: https://github.com/cran/Seurat
• URL: https://satijalab.org/seurat, https://github.com/satijalab/seurat
• BugReports: https://github.com/satijalab/seurat/issues
• Date/Publication: 2020-09-26 04:30:12 UTC
• Number of recursive dependencies: 230

Run cloud_details(, "Seurat") for more info

Error before installation

Devel

* using log directory ‘/tmp/workdir/Seurat/new/Seurat.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘Seurat/DESCRIPTION’ ... OK
* this is package ‘Seurat’ version ‘3.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages suggested but not available:
  'S4Vectors', 'SummarizedExperiment', 'SingleCellExperiment', 'MAST',
  'DESeq2', 'BiocGenerics', 'GenomicRanges', 'GenomeInfoDb', 'IRanges',
  'rtracklayer', 'monocle', 'Biobase', 'limma', 'metap'

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR

CRAN

* using log directory ‘/tmp/workdir/Seurat/old/Seurat.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘Seurat/DESCRIPTION’ ... OK
* this is package ‘Seurat’ version ‘3.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages suggested but not available:
  'S4Vectors', 'SummarizedExperiment', 'SingleCellExperiment', 'MAST',
  'DESeq2', 'BiocGenerics', 'GenomicRanges', 'GenomeInfoDb', 'IRanges',
  'rtracklayer', 'monocle', 'Biobase', 'limma', 'metap'

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR

nmutai/patchwork documentation built on Dec. 31, 2020, 12:08 a.m.