A reference map of the mouse Immune System
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Open an R session, type the following command and select a CRAN mirror when prompted.
install.packages("devtools")
Once the devtools package has been installed type the following commands in your R session
library(devtools)
install_github("nolanlab/MouseImmuneReference")
Download the data file available here and save it anywhere on your computer (This is the .scaffold file that is mentioned on the webpage at the above link). Launch the MouseImmuneReference GUI by typing the following commands in an R session
library(MouseImmuneReference)
MouseImmuneReference.run()
When you launch the GUI you will be prompted to select the data file you just downloaded. After that a browser window will pop-up with the GUI running inside. The data will take a minute or so to load. When the data loading process is completed you will see a list of markers appearing in the right part of the interface. To quit the GUI simply press ESC in your R session.
This is a rundown of what the operation of the differnent controls:
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