Description Usage Arguments Value Author(s) See Also
The function calculates overlap counts and Fisher exact test p-values for the given two sets of module assignments.
1 2 3 4 | overlapTable(
labels1, labels2,
na.rm = TRUE, ignore = NULL,
levels1 = NULL, levels2 = NULL)
|
labels1 |
a vector containing module labels. |
labels2 |
a vector containing module labels to be compared to |
na.rm |
logical: should entries missing in either |
ignore |
an optional vector giving label levels that are to be ignored. |
levels1 |
optional vector giving levels for |
levels2 |
optional vector giving levels for |
A list with the following components:
countTable |
a matrix whose rows correspond to modules (unique labels) in |
pTable |
a matrix whose rows correspond to modules (unique labels) in |
Peter Langfelder
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