README.md

In nt-williams/tmleExtract: Extract treatment specific mean estimates in a tidy format.

tmleExtract is no longer under active development and has merged with tmleplus

tmleExtract

The goal of tmleExtract is to extract parameter estimates from TMLE fits produced by the tmle package in a tidy format.

Installation

You can install with:

devtools::install_github("nt-williams/tmleExtract")

Example

Basic example:

library(tmleExtract)

set.seed(1)
n <- 250
W <- matrix(rnorm(n*3), ncol=3)
A <- rbinom(n,1, 1/(1+exp(-(.2*W[,1] - .1*W[,2] + .4*W[,3]))))
Y <- A + 2*W[,1] + W[,3] + W[,2]^2 + rnorm(n)
tmle_fit <- tmle::tmle(Y,A,W, Q.SL.library = "SL.glm", g.SL.library = "SL.glm")
#> Loading required package: nnls

tmle_extract(tmle_fit, A, Y)
#>   parameter estimate   variance standard_error        z            p
#> 1       Q1W 2.081951 0.05366308      0.2316529 8.987370 2.532171e-19
#> 2       Q0W 1.066229 0.05208988      0.2282321 4.671688 2.987347e-06
#> 3       ATE 1.015722 0.06779690      0.2603784 3.900945 9.581804e-05
#> 4       ATT 1.009826 0.07016059      0.2648784 3.812414 1.376163e-04
#> 5       ATC 1.030625 0.06696742      0.2587806 3.982619 6.815996e-05
#>    conf.low conf.high
#> 1 1.6279192  2.535982
#> 2 0.6189024  1.513556
#> 3 0.5053894  1.526054
#> 4 0.4906645  1.528988
#> 5 0.5234146  1.537835

nt-williams/tmleExtract documentation built on Feb. 28, 2020, 6:32 p.m.