install_nimfa: Import python nimfa library for use in R

In nturaga/BiocNimfa: Bioconductor package to interface with python package Nimfa

Description

Import python nimfa library for use in R

Usage

install_nimfa(envname = "BiocNimfa")

nimfa()

Arguments

envname

character(1) name of the virtual environment (usually under '~/.virtualenvs' where Nimfa and its python dependencies are available.

Value

The nimfa module as a python builtin module

Examples

nimfa = nimfa()
v <- nimfa$examples$medulloblastoma$read(normalize=TRUE)
lsnmf <- nimfa$Lsnmf(v, seed="random_vcol", rank=50L, max_iter=100L)
lsnmf_fit <- lsnmf()
lsnmf_fit$fit$rss()

nturaga/BiocNimfa documentation built on May 3, 2019, 3:41 p.m.