TimeMin: Identify Time Points Mapping to 0 and 1

In ntyet/rmRNAseq: RNA-Seq Analysis for Repeated-Measures Data

Identify Time Points Mapping to 0 and 1

Description

This function is to identify which time points mapped to 0 and 1 based on the estimated correlations of observations between all pairs of time points. The correlation parameters are estimateed by fitting voomgls_Symm to the voom transformed data.

Usage

TimeMin(v, Subject, Time, ncores)

Arguments

v	output of voom function.
Subject	a vector of subjects or experimental units.
Time	a vector of time points.
ncores	number of cores for embarrassingly parallel procedure. Default value of ncores is 1.

Value

a vector of 2 components correspinding to the two time points that are mapping to 0, 1, respectively.

Examples

data(res)
data(covset)
v <- res$ori.res$v
v$E <- v$E[1:2,]
v$weights <- v$weights[1:2,]
Subject <- covset$ear
Time <- covset$time
ncores <- 1
TimeMinout <- rmRNAseq:::TimeMin(v, Subject, Time, ncores)
TimeMinout

ntyet/rmRNAseq documentation built on July 7, 2023, 11:10 a.m.