API for nucleosome-dynamics/NucDyn
Nucleosome Dynamics
| Global functions | |
|---|---|
| .absPos | Source code |
| .addDynamics | Source code |
| .buildNucDyn | Source code |
| .buildZoneRange | Source code |
| .doZone | Source code |
| .dyadPos | Source code |
| .getGRLs | Source code |
| .getInRange | Source code |
| .hsFromCov | Source code |
| .initEmptyVect | Source code |
| .joinZones | Source code |
| .makeVectsEqual | Source code |
| .nucleosomeDynamics | Source code |
| .parseShifts | Source code |
| .plotCoverage | Source code |
| .rmLongReads | Source code |
| .separateGroups | Source code |
| .separateShifts | Source code |
| .setSizeTo | Source code |
| .shrinker | Source code |
| .stdSetLen | Source code |
| .subsetCov | Source code |
| .xlapply | Source code |
| NucDyn | Man page |
| NucDyn-class | Man page |
| NucDyn-package | Man page |
| applyThreshold | Man page Source code |
| compose | Source code |
| contained | Source code |
| doBySplitting | Source code |
| do_shifts | Source code |
| equals | Source code |
| equals_at_dist | Source code |
| findHotspots | Man page |
| findHotspots,NucDyn-method | Man page |
| findPVals | Man page |
| find_abs_pos | Source code |
| find_subs | Source code |
| get_pvals | Source code |
| nuc_chrII | Man page |
| nucdyn-accessors | Man page |
| nucleosomeDynamics | Man page |
| nucleosomeDynamics,GRanges,GRanges-method | Man page |
| nucleosomeDynamics,IRanges,IRanges-method | Man page |
| nucleosomeDynamics,RangedData,RangedData-method | Man page |
| plotDynamics | Man page |
| plotDynamics,NucDyn-method | Man page |
| readsG2_chrII | Man page |
| readsM_chrII | Man page |
| same_end | Source code |
| same_start | Source code |
| sample_chrII | Man page |
| set.a | Man page |
| set.a,NucDyn-method | Man page |
| set.b | Man page |
| set.b,NucDyn-method | Man page |
| shifts | Source code |
