| applyThreshold | Apply threshold | 
| findHotspots | Find hotspots in a NucDyn object. | 
| findPVals | Calculate a vector of p-values expressing the difference... | 
| nuc_chrII | Sample chromosome II nucleosome calls | 
| nucdyn-accessors | Accessors to a NucDyn object | 
| NucDyn-class | Nucleosome Dynamics calculation. | 
| NucDyn-package | Comparative dynamics analysis at a read level bewteen NGS... | 
| nucleosomeDynamics | Run nucleosomeDynamics to compare two sets. | 
| plotDynamics | Plot a NucDyn object. | 
| readsG2_chrII | Sample reads from MNase-seq G2 cells in yeast | 
| readsM_chrII | Sample reads from MNase-seq M cells in yeast | 
| sample_chrII | Sample chromosome II coverage data | 
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