| applyThreshold | Apply threshold |
| findHotspots | Find hotspots in a NucDyn object. |
| findPVals | Calculate a vector of p-values expressing the difference... |
| nuc_chrII | Sample chromosome II nucleosome calls |
| nucdyn-accessors | Accessors to a NucDyn object |
| NucDyn-class | Nucleosome Dynamics calculation. |
| NucDyn-package | Comparative dynamics analysis at a read level bewteen NGS... |
| nucleosomeDynamics | Run nucleosomeDynamics to compare two sets. |
| plotDynamics | Plot a NucDyn object. |
| readsG2_chrII | Sample reads from MNase-seq G2 cells in yeast |
| readsM_chrII | Sample reads from MNase-seq M cells in yeast |
| sample_chrII | Sample chromosome II coverage data |
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