hg19_10kb_bins: 10Kb bins from hg19 with GM12878 metadata annotation features

In nullranges/nullrangesData: ExperimentHub datasets for the nullranges package

10Kb bins from hg19 with GM12878 metadata annotation features

Description

10Kb bins were tiled across hg19 and annotated with CTCF and DNase site features from GM12878. Feature annotations for each bin include 1) the number of CTCF sites, 2) the CTCF signal strength (from peak calls), 3) the number of DNase sites, 4) the DNase signal strength (from signal tracks), and finally 5) the presence/absence of a loop to any other bin. Function returns a GRanges object with covariate metadata

Examples

bins <- hg19_10kb_bins()
bins

nullranges/nullrangesData documentation built on Feb. 3, 2023, 12:28 p.m.