Man pages for nwfsc-assess/VAST_WestCoast
Estimation and simulation with VAST for the US West Coast
| check_rtools | Check Rtools is installed properly |
| check_TMB | Check TMB is working |
| clean_data | Clean Database for VAST |
| clean_unload | Unload VAST dll |
| convert_strata4plot | Convert Strata Names for Plot Text |
| convert_strata4vast | Convert Area-Based Strata to VAST Strata |
| convert_survey4vast | Convert survey name to VAST column name |
| Database | Example Database from 2019 for Sablefish |
| get_data | Obtain Data for a VAST Model |
| get_depthbin | Get Depth by Year |
| get_error | Get R objects from model with error |
| get_inputgrid | Get the input grid for a given survey |
| get_logratio | Calculate the log-ratio of the index data. |
| get_mesh | Get Mesh for West Coast |
| get_mesh.meshbuilder | Get Mesh Using Settings from 'meshbuilder()' |
| get_mesh.tmb | Get Mesh Using Settings from TMB Example |
| get_settings | Add default settings to user list |
| get_settings_single | Get Settings For a Single Parameter |
| get_spp | Get the Species and Survey Name |
| plot_caption | Make and Save a Figure Caption |
| plot_index | Comparison Plot of Estimated Indices of Relative Abundance |
| plot.inputgrid | Plot input grid |
| plot.mesh | Plot mesh |
| plot_multi_histogram | Plot Multiple Histograms |
| plot_qq | Plot quantiles versus theoretical quantiles |
| plot_ss | Plot index from SS table |
| plot_westcoast | Plot the US West Coast |
| show_greek | Show list of greek letters and their meaning |
| summary_nwfsc | Summarize a VAST model for Northwest Fisheries Science Center |
| summary_session | Save Detailed Session Info to the Disk |
| VAST_condition | Estimate parameters by fitting VAST to empirical data |
| VAST_diagnostics | Run diagnostic plots for VASTWestCoast output |
| VAST_do | Shortened code for FishStatsUtils::fit_model |
| VAST_mesh | Create grid and mesh for VASTWestCoast |
| VAST_spp | Run 'VAST' models for a species sampled by west coast surveys |
