check_rtools | Check Rtools is installed properly |
check_TMB | Check TMB is working |
clean_data | Clean Database for VAST |
clean_unload | Unload VAST dll |
convert_strata4plot | Convert Strata Names for Plot Text |
convert_strata4vast | Convert Area-Based Strata to VAST Strata |
convert_survey4vast | Convert survey name to VAST column name |
Database | Example Database from 2019 for Sablefish |
get_data | Obtain Data for a VAST Model |
get_depthbin | Get Depth by Year |
get_error | Get R objects from model with error |
get_inputgrid | Get the input grid for a given survey |
get_logratio | Calculate the log-ratio of the index data. |
get_mesh | Get Mesh for West Coast |
get_mesh.meshbuilder | Get Mesh Using Settings from 'meshbuilder()' |
get_mesh.tmb | Get Mesh Using Settings from TMB Example |
get_settings | Add default settings to user list |
get_settings_single | Get Settings For a Single Parameter |
get_spp | Get the Species and Survey Name |
plot_caption | Make and Save a Figure Caption |
plot_index | Comparison Plot of Estimated Indices of Relative Abundance |
plot.inputgrid | Plot input grid |
plot.mesh | Plot mesh |
plot_multi_histogram | Plot Multiple Histograms |
plot_qq | Plot quantiles versus theoretical quantiles |
plot_ss | Plot index from SS table |
plot_westcoast | Plot the US West Coast |
show_greek | Show list of greek letters and their meaning |
summary_nwfsc | Summarize a VAST model for Northwest Fisheries Science Center |
summary_session | Save Detailed Session Info to the Disk |
VAST_condition | Estimate parameters by fitting VAST to empirical data |
VAST_diagnostics | Run diagnostic plots for VASTWestCoast output |
VAST_do | Shortened code for FishStatsUtils::fit_model |
VAST_mesh | Create grid and mesh for VASTWestCoast |
VAST_spp | Run 'VAST' models for a species sampled by west coast surveys |
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