Man pages for nwfsc-math-bio/NWCTrends
Standardized Trend Metrics for Salmonid Populations
| choose.esu | Choose ESU |
| clean.mpg | Lighter clean up population names |
| clean.pops | Clean up population names |
| data_setup | Read in the inputfile |
| fracwild_multipanel | Figure of the raw and smoothed fracwild estimates. |
| fracwild_table | Make average and geomean fraction wild tables |
| geomean_table | Create the geomean tables |
| nwctrends.options | NWCTrends options and plot variables |
| NWCTrends-package | NWFSC PNW Salmonid Viability Report Standardized Metrics |
| NWCTrends_report | NWFSC PNW Salmonid Viability Report Table and Figures |
| productivity_plot | Productivity plot |
| Status_trendfigure_multipanel | Main figure of estimated trends (wild and total spawners) |
| Status_trendfigure_multipanel_csv | data frame of estimated trends (wild and total spawners) |
| trend_15_table | Create the trend tables |
| trend_fits | Fit a MARSS model and store in a list |
